Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G389_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  29,885,547
 Normal Paired: 16,571,571 (55.45%)
 Chimeric Paired: 10,166,052 (34.02%)
 Chimeric Ambiguous: 3,070,568 (10.27%)
 Unmapped: 77,356 (0.26%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 26,737,623 (89.47%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T03:05:17,986]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 24,900,459 (83.32%)
PCR Duplicates: 1,837,164 (6.15%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 185,547,795
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,969,757 (6.59% / 7.91%)
Hi-C Contacts: 22,930,702 (76.73% / 92.09%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 67.6%
Inter-chromosomal: 2,864,533  (9.59% / 11.50%)
Intra-chromosomal: 20,066,169  (67.14% / 80.59%)
Short Range (<20,000bp): 16,987,950  (56.84% / 68.22%)
Long Range (>20,000bp): 3,078,219  (10.30% / 12.36%)