Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1481_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  43,738,617
 Normal Paired: 25,494,556 (58.29%)
 Chimeric Paired: 14,076,918 (32.18%)
 Chimeric Ambiguous: 4,055,618 (9.27%)
 Unmapped: 111,525 (0.25%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 39,571,474 (90.47%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T08:44:50,081]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 36,908,193 (84.38%)
PCR Duplicates: 2,663,281 (6.09%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 280,635,772
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,536,359 (10.37% / 12.29%)
Hi-C Contacts: 32,371,834 (74.01% / 87.71%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 57.9%
Inter-chromosomal: 4,742,443  (10.84% / 12.85%)
Intra-chromosomal: 27,629,391  (63.17% / 74.86%)
Short Range (<20,000bp): 23,789,251  (54.39% / 64.46%)
Long Range (>20,000bp): 3,840,140  (8.78% / 10.40%)