Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1522_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  61,953,670
 Normal Paired: 39,181,895 (63.24%)
 Chimeric Paired: 17,239,311 (27.83%)
 Chimeric Ambiguous: 4,913,075 (7.93%)
 Unmapped: 619,389 (1.00%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 56,421,206 (91.07%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-01T15:39:30,349]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 51,842,215 (83.68%)
PCR Duplicates: 4,578,991 (7.39%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 328,531,041
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,600,200 (5.81% / 6.94%)
Hi-C Contacts: 48,242,015 (77.87% / 93.06%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 84% - 5% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 63.3%
Inter-chromosomal: 5,475,356  (8.84% / 10.56%)
Intra-chromosomal: 42,766,659  (69.03% / 82.49%)
Short Range (<20,000bp): 37,860,405  (61.11% / 73.03%)
Long Range (>20,000bp): 4,906,254  (7.92% / 9.46%)