Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1522_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  61,953,670
 Normal Paired: 39,181,895 (63.24%)
 Chimeric Paired: 17,239,311 (27.83%)
 Chimeric Ambiguous: 4,913,075 (7.93%)
 Unmapped: 619,389 (1.00%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 56,421,206 (91.07%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-01T15:39:30,349]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 51,842,215 (83.68%)
PCR Duplicates: 4,578,991 (7.39%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 328,531,041
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,844,216 (9.43% / 11.27%)
Hi-C Contacts: 45,997,999 (74.25% / 88.73%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 70%
 Cis/all (FF and RR orient): 64.3%
Inter-chromosomal: 4,884,571  (7.88% / 9.42%)
Intra-chromosomal: 41,113,428  (66.36% / 79.30%)
Short Range (<20,000bp): 36,571,023  (59.03% / 70.54%)
Long Range (>20,000bp): 4,542,405  (7.33% / 8.76%)