Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F872_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  81,211,769
 Normal Paired: 42,767,407 (52.66%)
 Chimeric Paired: 28,346,488 (34.90%)
 Chimeric Ambiguous: 9,253,897 (11.39%)
 Unmapped: 843,977 (1.04%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 71,113,895 (87.57%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T18:56:42,645]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 65,620,735 (80.80%)
PCR Duplicates: 5,493,160 (6.76%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 436,293,587
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,154,457 (6.35% / 7.85%)
Hi-C Contacts: 60,466,278 (74.46% / 92.15%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 59.6%
Inter-chromosomal: 10,328,337  (12.72% / 15.74%)
Intra-chromosomal: 50,137,941  (61.74% / 76.41%)
Short Range (<20,000bp): 40,176,080  (49.47% / 61.22%)
Long Range (>20,000bp): 9,961,861  (12.27% / 15.18%)