Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F872_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98 Sequenced Read Pairs: 81,211,769 Normal Paired: 42,767,407 (52.66%) Chimeric Paired: 28,346,488 (34.90%) Chimeric Ambiguous: 9,253,897 (11.39%) Unmapped: 843,977 (1.04%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 71,113,895 (87.57%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2025-04-03T18:56:42,645] [Globals.java:138] [main] Development mode is enabled Unique Reads: 65,620,735 (80.80%) PCR Duplicates: 5,493,160 (6.76%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 436,293,587 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 8,190,577 (10.09% / 12.48%) Hi-C Contacts: 57,430,158 (70.72% / 87.52%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 59% Cis/all (FF and RR orient): 60.5% Inter-chromosomal: 9,327,603 (11.49% / 14.21%) Intra-chromosomal: 48,102,555 (59.23% / 73.30%) Short Range (<20,000bp): 38,805,357 (47.78% / 59.14%) Long Range (>20,000bp): 9,297,198 (11.45% / 14.17%)