Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G118_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  6,716,784
 Normal Paired: 3,264,241 (48.60%)
 Chimeric Paired: 2,329,120 (34.68%)
 Chimeric Ambiguous: 1,022,895 (15.23%)
 Unmapped: 100,528 (1.50%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 5,593,361 (83.27%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T20:41:52,584]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,467,972 (81.41%)
PCR Duplicates: 125,389 (1.87%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 122,883,008
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 753,838 (11.22% / 13.79%)
Hi-C Contacts: 4,714,134 (70.18% / 86.21%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 65.4%
Inter-chromosomal: 686,561  (10.22% / 12.56%)
Intra-chromosomal: 4,027,573  (59.96% / 73.66%)
Short Range (<20,000bp): 3,304,305  (49.19% / 60.43%)
Long Range (>20,000bp): 723,268  (10.77% / 13.23%)