Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1129_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  62,159,976
 Normal Paired: 28,381,404 (45.66%)
 Chimeric Paired: 24,128,607 (38.82%)
 Chimeric Ambiguous: 9,518,239 (15.31%)
 Unmapped: 131,726 (0.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 52,510,011 (84.48%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T22:42:25,289]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 51,256,234 (82.46%)
PCR Duplicates: 1,253,777 (2.02%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,082,024,064
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,099,787 (6.60% / 8.00%)
Hi-C Contacts: 47,156,447 (75.86% / 92.00%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 52%
 Cis/all (FF and RR orient): 66.4%
Inter-chromosomal: 7,603,477  (12.23% / 14.83%)
Intra-chromosomal: 39,552,970  (63.63% / 77.17%)
Short Range (<20,000bp): 31,692,739  (50.99% / 61.83%)
Long Range (>20,000bp): 7,860,231  (12.65% / 15.34%)