Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F2255_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  100,732,604
 Normal Paired: 47,829,323 (47.48%)
 Chimeric Paired: 38,707,295 (38.43%)
 Chimeric Ambiguous: 13,997,703 (13.90%)
 Unmapped: 198,283 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 86,536,618 (85.91%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T13:08:54,430]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 83,142,437 (82.54%)
PCR Duplicates: 3,394,181 (3.37%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,074,112,538
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,429,699 (6.38% / 7.73%)
Hi-C Contacts: 76,712,738 (76.15% / 92.27%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 53%
 Cis/all (FF and RR orient): 60.9%
Inter-chromosomal: 14,197,105  (14.09% / 17.08%)
Intra-chromosomal: 62,515,633  (62.06% / 75.19%)
Short Range (<20,000bp): 49,493,781  (49.13% / 59.53%)
Long Range (>20,000bp): 13,021,852  (12.93% / 15.66%)