Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F2143_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  54,435,351
 Normal Paired: 26,195,317 (48.12%)
 Chimeric Paired: 19,995,431 (36.73%)
 Chimeric Ambiguous: 8,137,407 (14.95%)
 Unmapped: 107,196 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 46,190,748 (84.85%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-02T21:06:09,310]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 43,853,506 (80.56%)
PCR Duplicates: 2,337,242 (4.29%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 440,901,849
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,844,913 (10.74% / 13.33%)
Hi-C Contacts: 38,008,593 (69.82% / 86.67%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 55%
 Cis/all (FF and RR orient): 60.9%
Inter-chromosomal: 6,671,158  (12.26% / 15.21%)
Intra-chromosomal: 31,337,435  (57.57% / 71.46%)
Short Range (<20,000bp): 25,312,907  (46.50% / 57.72%)
Long Range (>20,000bp): 6,024,528  (11.07% / 13.74%)