Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1884_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  51,159,188
 Normal Paired: 27,116,835 (53.00%)
 Chimeric Paired: 17,877,306 (34.94%)
 Chimeric Ambiguous: 6,027,449 (11.78%)
 Unmapped: 137,598 (0.27%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 44,994,141 (87.95%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-04T17:49:02,845]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,238,034 (82.56%)
PCR Duplicates: 2,756,107 (5.39%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 352,113,962
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,693,424 (7.22% / 8.74%)
Hi-C Contacts: 38,544,610 (75.34% / 91.26%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 51.7%
Inter-chromosomal: 7,479,552  (14.62% / 17.71%)
Intra-chromosomal: 31,065,058  (60.72% / 73.55%)
Short Range (<20,000bp): 25,898,213  (50.62% / 61.31%)
Long Range (>20,000bp): 5,166,845  (10.10% / 12.23%)