Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1166_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  46,572,251
 Normal Paired: 24,697,943 (53.03%)
 Chimeric Paired: 16,262,720 (34.92%)
 Chimeric Ambiguous: 5,500,965 (11.81%)
 Unmapped: 110,623 (0.24%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 40,960,663 (87.95%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T13:34:34,723]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,483,245 (84.78%)
PCR Duplicates: 1,477,418 (3.17%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 554,069,528
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,180,978 (11.12% / 13.12%)
Hi-C Contacts: 34,302,267 (73.65% / 86.88%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 72.7%
Inter-chromosomal: 3,686,874  (7.92% / 9.34%)
Intra-chromosomal: 30,615,393  (65.74% / 77.54%)
Short Range (<20,000bp): 25,014,003  (53.71% / 63.35%)
Long Range (>20,000bp): 5,601,390  (12.03% / 14.19%)