Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1166_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98 Sequenced Read Pairs: 46,572,251 Normal Paired: 24,697,943 (53.03%) Chimeric Paired: 16,262,720 (34.92%) Chimeric Ambiguous: 5,500,965 (11.81%) Unmapped: 110,623 (0.24%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 40,960,663 (87.95%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2025-04-05T13:34:34,723] [Globals.java:138] [main] Development mode is enabled Unique Reads: 39,483,245 (84.78%) PCR Duplicates: 1,477,418 (3.17%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 554,069,528 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 5,180,978 (11.12% / 13.12%) Hi-C Contacts: 34,302,267 (73.65% / 86.88%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 61% Cis/all (FF and RR orient): 72.7% Inter-chromosomal: 3,686,874 (7.92% / 9.34%) Intra-chromosomal: 30,615,393 (65.74% / 77.54%) Short Range (<20,000bp): 25,014,003 (53.71% / 63.35%) Long Range (>20,000bp): 5,601,390 (12.03% / 14.19%)