Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G2073_21 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  139,600,455
 Normal Paired: 69,720,184 (49.94%)
 Chimeric Paired: 50,594,331 (36.24%)
 Chimeric Ambiguous: 19,005,620 (13.61%)
 Unmapped: 280,320 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 120,314,515 (86.18%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-10T04:16:15,231]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 112,702,228 (80.73%)
PCR Duplicates: 7,612,287 (5.45%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 910,261,135
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 15,058,542 (10.79% / 13.36%)
Hi-C Contacts: 97,643,686 (69.95% / 86.64%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 57%
 Cis/all (FF and RR orient): 60.9%
Inter-chromosomal: 16,437,572  (11.77% / 14.58%)
Intra-chromosomal: 81,206,114  (58.17% / 72.05%)
Short Range (<20,000bp): 65,346,282  (46.81% / 57.98%)
Long Range (>20,000bp): 15,859,832  (11.36% / 14.07%)