Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G509_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  71,495,564
 Normal Paired: 33,539,207 (46.91%)
 Chimeric Paired: 27,897,170 (39.02%)
 Chimeric Ambiguous: 9,948,916 (13.92%)
 Unmapped: 110,271 (0.15%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 61,436,377 (85.93%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-02T09:11:13,262]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 60,168,374 (84.16%)
PCR Duplicates: 1,268,003 (1.77%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,467,785,737
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,786,652 (10.89% / 12.94%)
Hi-C Contacts: 52,381,722 (73.27% / 87.06%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 73% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 59.6%
Inter-chromosomal: 10,439,346  (14.60% / 17.35%)
Intra-chromosomal: 41,942,376  (58.66% / 69.71%)
Short Range (<20,000bp): 31,787,858  (44.46% / 52.83%)
Long Range (>20,000bp): 10,154,518  (14.20% / 16.88%)