Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G278_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  60,381,246
 Normal Paired: 34,491,913 (57.12%)
 Chimeric Paired: 19,866,222 (32.90%)
 Chimeric Ambiguous: 5,825,957 (9.65%)
 Unmapped: 197,154 (0.33%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,358,135 (90.02%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T12:05:36,089]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 50,425,330 (83.51%)
PCR Duplicates: 3,932,805 (6.51%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 357,314,770
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,068,965 (6.74% / 8.07%)
Hi-C Contacts: 46,356,365 (76.77% / 91.93%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 67.6%
Inter-chromosomal: 5,561,277  (9.21% / 11.03%)
Intra-chromosomal: 40,795,088  (67.56% / 80.90%)
Short Range (<20,000bp): 33,996,772  (56.30% / 67.42%)
Long Range (>20,000bp): 6,798,316  (11.26% / 13.48%)