Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G339_17 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  58,524,368
 Normal Paired: 25,725,213 (43.96%)
 Chimeric Paired: 21,272,167 (36.35%)
 Chimeric Ambiguous: 10,720,895 (18.32%)
 Unmapped: 806,093 (1.38%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 46,997,380 (80.30%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T02:57:29,743]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 43,066,240 (73.59%)
PCR Duplicates: 3,931,140 (6.72%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 265,035,921
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,668,422 (7.98% / 10.84%)
Hi-C Contacts: 38,397,818 (65.61% / 89.16%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 55%
 Cis/all (FF and RR orient): 52.1%
Inter-chromosomal: 8,250,161  (14.10% / 19.16%)
Intra-chromosomal: 30,147,657  (51.51% / 70.00%)
Short Range (<20,000bp): 24,677,852  (42.17% / 57.30%)
Long Range (>20,000bp): 5,469,805  (9.35% / 12.70%)