Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G345_21 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  54,517,004
 Normal Paired: 28,393,236 (52.08%)
 Chimeric Paired: 19,019,490 (34.89%)
 Chimeric Ambiguous: 6,941,541 (12.73%)
 Unmapped: 162,737 (0.30%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 47,412,726 (86.97%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-02T05:05:37,022]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 45,856,181 (84.11%)
PCR Duplicates: 1,556,545 (2.86%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 706,209,115
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,906,022 (7.16% / 8.52%)
Hi-C Contacts: 41,950,159 (76.95% / 91.48%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 60.1%
Inter-chromosomal: 7,084,294  (12.99% / 15.45%)
Intra-chromosomal: 34,865,865  (63.95% / 76.03%)
Short Range (<20,000bp): 28,728,297  (52.70% / 62.65%)
Long Range (>20,000bp): 6,137,568  (11.26% / 13.38%)