Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1209_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  66,515,931
 Normal Paired: 28,801,793 (43.30%)
 Chimeric Paired: 25,142,022 (37.80%)
 Chimeric Ambiguous: 12,431,303 (18.69%)
 Unmapped: 140,813 (0.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 53,943,815 (81.10%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T23:46:40,881]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 52,685,751 (79.21%)
PCR Duplicates: 1,258,064 (1.89%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,138,461,125
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,791,541 (7.20% / 9.09%)
Hi-C Contacts: 47,894,210 (72.00% / 90.91%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 56.3%
Inter-chromosomal: 10,178,583  (15.30% / 19.32%)
Intra-chromosomal: 37,715,627  (56.70% / 71.59%)
Short Range (<20,000bp): 29,518,300  (44.38% / 56.03%)
Long Range (>20,000bp): 8,197,327  (12.32% / 15.56%)