Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1209_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  66,515,931
 Normal Paired: 28,801,793 (43.30%)
 Chimeric Paired: 25,142,022 (37.80%)
 Chimeric Ambiguous: 12,431,303 (18.69%)
 Unmapped: 140,813 (0.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 53,943,815 (81.10%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T23:46:40,881]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 52,685,751 (79.21%)
PCR Duplicates: 1,258,064 (1.89%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,138,461,125
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,830,072 (11.77% / 14.86%)
Hi-C Contacts: 44,855,679 (67.44% / 85.14%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 53%
 Cis/all (FF and RR orient): 57.3%
Inter-chromosomal: 9,050,512  (13.61% / 17.18%)
Intra-chromosomal: 35,805,167  (53.83% / 67.96%)
Short Range (<20,000bp): 28,254,445  (42.48% / 53.63%)
Long Range (>20,000bp): 7,550,722  (11.35% / 14.33%)