Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1359_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  26,775,347
 Normal Paired: 11,313,746 (42.25%)
 Chimeric Paired: 10,112,774 (37.77%)
 Chimeric Ambiguous: 5,225,464 (19.52%)
 Unmapped: 123,363 (0.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 21,426,520 (80.02%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T11:12:06,442]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 20,857,101 (77.90%)
PCR Duplicates: 569,419 (2.13%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 395,952,220
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,372,756 (8.86% / 11.38%)
Hi-C Contacts: 18,484,345 (69.03% / 88.62%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 52%
 Cis/all (FF and RR orient): 57.9%
Inter-chromosomal: 3,721,535  (13.90% / 17.84%)
Intra-chromosomal: 14,762,810  (55.14% / 70.78%)
Short Range (<20,000bp): 11,871,312  (44.34% / 56.92%)
Long Range (>20,000bp): 2,891,498  (10.80% / 13.86%)