Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G2610_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  37,330,524
 Normal Paired: 18,851,688 (50.50%)
 Chimeric Paired: 12,974,901 (34.76%)
 Chimeric Ambiguous: 5,396,175 (14.46%)
 Unmapped: 107,760 (0.29%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 31,826,589 (85.26%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-06T02:13:02,193]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 31,316,057 (83.89%)
PCR Duplicates: 510,532 (1.37%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 981,398,059
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,629,499 (7.04% / 8.40%)
Hi-C Contacts: 28,686,558 (76.84% / 91.60%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 63.2%
Inter-chromosomal: 4,403,168  (11.80% / 14.06%)
Intra-chromosomal: 24,283,390  (65.05% / 77.54%)
Short Range (<20,000bp): 20,229,550  (54.19% / 64.60%)
Long Range (>20,000bp): 4,053,840  (10.86% / 12.94%)