Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G589_17 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  31,393,763
 Normal Paired: 16,413,040 (52.28%)
 Chimeric Paired: 10,301,395 (32.81%)
 Chimeric Ambiguous: 4,489,187 (14.30%)
 Unmapped: 190,141 (0.61%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 26,714,435 (85.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T21:11:39,070]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 24,621,434 (78.43%)
PCR Duplicates: 2,093,001 (6.67%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 161,461,287
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,172,763 (13.29% / 16.95%)
Hi-C Contacts: 20,448,671 (65.14% / 83.05%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 55.4%
Inter-chromosomal: 3,342,895  (10.65% / 13.58%)
Intra-chromosomal: 17,105,776  (54.49% / 69.48%)
Short Range (<20,000bp): 14,809,071  (47.17% / 60.15%)
Long Range (>20,000bp): 2,296,705  (7.32% / 9.33%)