Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G592_17 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  88,031,286
 Normal Paired: 49,679,801 (56.43%)
 Chimeric Paired: 28,102,341 (31.92%)
 Chimeric Ambiguous: 9,742,315 (11.07%)
 Unmapped: 506,829 (0.58%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 77,782,142 (88.36%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-06T10:43:45,069]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 70,369,143 (79.94%)
PCR Duplicates: 7,412,999 (8.42%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 381,709,542
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,613,005 (12.06% / 15.08%)
Hi-C Contacts: 59,756,138 (67.88% / 84.92%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 57.5%
Inter-chromosomal: 8,847,713  (10.05% / 12.57%)
Intra-chromosomal: 50,908,425  (57.83% / 72.34%)
Short Range (<20,000bp): 43,695,383  (49.64% / 62.09%)
Long Range (>20,000bp): 7,213,042  (8.19% / 10.25%)