Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G716_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  160,393,495
 Normal Paired: 85,271,699 (53.16%)
 Chimeric Paired: 56,438,673 (35.19%)
 Chimeric Ambiguous: 18,034,363 (11.24%)
 Unmapped: 648,760 (0.40%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 141,710,372 (88.35%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-01T22:00:45,835]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 134,869,982 (84.09%)
PCR Duplicates: 6,840,390 (4.26%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,420,259,377
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,747,135 (6.70% / 7.97%)
Hi-C Contacts: 124,122,847 (77.39% / 92.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 68.3%
Inter-chromosomal: 16,604,884  (10.35% / 12.31%)
Intra-chromosomal: 107,517,963  (67.03% / 79.72%)
Short Range (<20,000bp): 87,269,596  (54.41% / 64.71%)
Long Range (>20,000bp): 20,248,367  (12.62% / 15.01%)