Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G903_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  79,714,072
 Normal Paired: 39,908,670 (50.06%)
 Chimeric Paired: 31,402,900 (39.39%)
 Chimeric Ambiguous: 8,294,353 (10.41%)
 Unmapped: 108,149 (0.14%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 71,311,570 (89.46%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T03:00:50,112]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 70,025,560 (87.85%)
PCR Duplicates: 1,286,010 (1.61%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,953,334,813
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,581,361 (7.00% / 7.97%)
Hi-C Contacts: 64,444,199 (80.84% / 92.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 50%
 Cis/all (FF and RR orient): 71.5%
Inter-chromosomal: 9,150,321  (11.48% / 13.07%)
Intra-chromosomal: 55,293,878  (69.37% / 78.96%)
Short Range (<20,000bp): 39,983,029  (50.16% / 57.10%)
Long Range (>20,000bp): 15,310,849  (19.21% / 21.86%)