Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G753_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  25,712,888
 Normal Paired: 14,160,496 (55.07%)
 Chimeric Paired: 8,508,395 (33.09%)
 Chimeric Ambiguous: 2,746,423 (10.68%)
 Unmapped: 297,574 (1.16%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 22,668,891 (88.16%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-04T16:56:37,356]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 20,938,635 (81.43%)
PCR Duplicates: 1,730,256 (6.73%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 140,841,311
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,774,875 (14.68% / 18.03%)
Hi-C Contacts: 17,163,760 (66.75% / 81.97%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 64%
 Cis/all (FF and RR orient): 78.4%
Inter-chromosomal: 1,336,517  (5.20% / 6.38%)
Intra-chromosomal: 15,827,243  (61.55% / 75.59%)
Short Range (<20,000bp): 13,560,431  (52.74% / 64.76%)
Long Range (>20,000bp): 2,266,812  (8.82% / 10.83%)