Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G722_24 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  54,204,903
 Normal Paired: 22,625,506 (41.74%)
 Chimeric Paired: 21,049,594 (38.83%)
 Chimeric Ambiguous: 10,420,837 (19.22%)
 Unmapped: 108,966 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 43,675,100 (80.57%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T08:15:36,061]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,526,792 (78.46%)
PCR Duplicates: 1,148,308 (2.12%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 815,953,027
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,702,915 (6.83% / 8.71%)
Hi-C Contacts: 38,823,877 (71.62% / 91.29%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 50%
 Cis/all (FF and RR orient): 63.6%
Inter-chromosomal: 7,106,959  (13.11% / 16.71%)
Intra-chromosomal: 31,716,918  (58.51% / 74.58%)
Short Range (<20,000bp): 23,691,931  (43.71% / 55.71%)
Long Range (>20,000bp): 8,024,987  (14.80% / 18.87%)