Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G924_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  94,222,011
 Normal Paired: 55,975,080 (59.41%)
 Chimeric Paired: 30,859,999 (32.75%)
 Chimeric Ambiguous: 7,154,959 (7.59%)
 Unmapped: 231,973 (0.25%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 86,835,079 (92.16%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T11:08:21,215]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 77,107,169 (81.84%)
PCR Duplicates: 9,727,910 (10.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 358,041,327
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,319,752 (5.65% / 6.90%)
Hi-C Contacts: 71,787,417 (76.19% / 93.10%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 67.3%
Inter-chromosomal: 8,651,575  (9.18% / 11.22%)
Intra-chromosomal: 63,135,842  (67.01% / 81.88%)
Short Range (<20,000bp): 53,083,435  (56.34% / 68.84%)
Long Range (>20,000bp): 10,052,407  (10.67% / 13.04%)