Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G924_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  94,222,011
 Normal Paired: 55,975,080 (59.41%)
 Chimeric Paired: 30,859,999 (32.75%)
 Chimeric Ambiguous: 7,154,959 (7.59%)
 Unmapped: 231,973 (0.25%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 86,835,079 (92.16%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T11:08:21,215]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 77,107,169 (81.84%)
PCR Duplicates: 9,727,910 (10.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 358,041,327
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,810,216 (9.35% / 11.43%)
Hi-C Contacts: 68,296,953 (72.49% / 88.57%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 64%
 Cis/all (FF and RR orient): 68.1%
Inter-chromosomal: 7,772,782  (8.25% / 10.08%)
Intra-chromosomal: 60,524,171  (64.24% / 78.49%)
Short Range (<20,000bp): 51,194,867  (54.33% / 66.39%)
Long Range (>20,000bp): 9,329,304  (9.90% / 12.10%)