Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/P28_15 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  160,692,039
 Normal Paired: 75,298,510 (46.86%)
 Chimeric Paired: 58,074,516 (36.14%)
 Chimeric Ambiguous: 26,936,041 (16.76%)
 Unmapped: 382,972 (0.24%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 133,373,026 (83.00%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-10T10:09:59,099]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 126,196,736 (78.53%)
PCR Duplicates: 7,176,290 (4.47%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,194,516,195
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 18,205,380 (11.33% / 14.43%)
Hi-C Contacts: 107,991,356 (67.20% / 85.57%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 6% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 45.7%
Inter-chromosomal: 25,596,502  (15.93% / 20.28%)
Intra-chromosomal: 82,394,854  (51.28% / 65.29%)
Short Range (<20,000bp): 68,343,413  (42.53% / 54.16%)
Long Range (>20,000bp): 14,051,441  (8.74% / 11.13%)