Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.9" 2023-10-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage3/gskoksharova/exoclasma_december_pool8/fasta/concatenated/P166/ -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/ -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  206,367,003
 Normal Paired: 151,308,485 (73.32%)
 Chimeric Paired: 46,649,209 (22.60%)
 Chimeric Ambiguous: 6,618,507 (3.21%)
 Unmapped: 1,790,802 (0.87%)
 Ligation Motif Present: 11 (0.00%)
Alignable (Normal+Chimeric Paired): 197,957,694 (95.93%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-02-26T06:47:38,771]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,353,407 (8.41%)
PCR Duplicates: 172,770,664 (83.72%)
Optical Duplicates: 7,833,623 (3.80%)
Library Complexity Estimate: 17,353,709
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,755,046 (1.82% / 21.64%)
Hi-C Contacts: 13,598,361 (6.59% / 78.36%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 9% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 80.0%
Inter-chromosomal: 1,189,389  (0.58% / 6.85%)
Intra-chromosomal: 12,408,972  (6.01% / 71.51%)
Short Range (<20,000bp): 9,891,165  (4.79% / 57.00%)
Long Range (>20,000bp): 2,517,807  (1.22% / 14.51%)