Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.9" 2023-10-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage3/gskoksharova/exoclasma_december_pool8/fasta/concatenated/P166/ -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/ -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  206,367,003
 Normal Paired: 151,308,485 (73.32%)
 Chimeric Paired: 46,649,209 (22.60%)
 Chimeric Ambiguous: 6,618,507 (3.21%)
 Unmapped: 1,790,802 (0.87%)
 Ligation Motif Present: 11 (0.00%)
Alignable (Normal+Chimeric Paired): 197,957,694 (95.93%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-02-26T06:47:38,771]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,353,407 (8.41%)
PCR Duplicates: 172,770,664 (83.72%)
Optical Duplicates: 7,833,623 (3.80%)
Library Complexity Estimate: 17,353,709
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,725,270 (2.29% / 27.23%)
Hi-C Contacts: 12,628,137 (6.12% / 72.77%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 81.4%
Inter-chromosomal: 996,358  (0.48% / 5.74%)
Intra-chromosomal: 11,631,779  (5.64% / 67.03%)
Short Range (<20,000bp): 9,354,406  (4.53% / 53.91%)
Long Range (>20,000bp): 2,277,373  (1.10% / 13.12%)