Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI_2023-12-4-Moscow/sar11 -s none -p /data/nyt/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /data/nyt/Databases/hg19_canonical/hg19_canonical.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  91,626,918
 Normal Paired: 69,266,258 (75.60%)
 Chimeric Paired: 19,496,813 (21.28%)
 Chimeric Ambiguous: 2,045,656 (2.23%)
 Unmapped: 818,191 (0.89%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 88,763,071 (96.87%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-02-22T14:06:14,966]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 10,671,518 (11.65%)
PCR Duplicates: 75,729,166 (82.65%)
Optical Duplicates: 2,362,387 (2.58%)
Library Complexity Estimate: 10,674,778
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,001,199 (2.18% / 18.75%)
Hi-C Contacts: 8,670,319 (9.46% / 81.25%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 57%
 Cis/all (FF and RR orient): 84.1%
Inter-chromosomal: 598,315  (0.65% / 5.61%)
Intra-chromosomal: 8,072,004  (8.81% / 75.64%)
Short Range (<20,000bp): 6,416,388  (7.00% / 60.13%)
Long Range (>20,000bp): 1,655,616  (1.81% / 15.51%)