Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI_2023-12-4-Moscow/sar11 -s none -p /data/nyt/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /data/nyt/Databases/hg19_canonical/hg19_canonical.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  91,626,918
 Normal Paired: 69,266,258 (75.60%)
 Chimeric Paired: 19,496,813 (21.28%)
 Chimeric Ambiguous: 2,045,656 (2.23%)
 Unmapped: 818,191 (0.89%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 88,763,071 (96.87%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-02-22T14:06:14,966]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 10,671,518 (11.65%)
PCR Duplicates: 75,729,166 (82.65%)
Optical Duplicates: 2,362,387 (2.58%)
Library Complexity Estimate: 10,674,778
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,560,157 (2.79% / 23.99%)
Hi-C Contacts: 8,111,361 (8.85% / 76.01%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 9% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 85.5%
Inter-chromosomal: 497,916  (0.54% / 4.67%)
Intra-chromosomal: 7,613,445  (8.31% / 71.34%)
Short Range (<20,000bp): 6,094,541  (6.65% / 57.11%)
Long Range (>20,000bp): 1,518,904  (1.66% / 14.23%)