Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI_2023-12-4-Moscow/sar3 -s none -p /data/nyt/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /data/nyt/Databases/hg19_canonical/hg19_canonical.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  38,271,129
 Normal Paired: 27,840,389 (72.75%)
 Chimeric Paired: 9,010,729 (23.54%)
 Chimeric Ambiguous: 1,040,754 (2.72%)
 Unmapped: 379,257 (0.99%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 36,851,118 (96.29%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-02-22T14:50:28,778]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,729,435 (14.97%)
PCR Duplicates: 30,228,497 (78.99%)
Optical Duplicates: 893,186 (2.33%)
Library Complexity Estimate: 5,740,361
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,357,515 (3.55% / 23.69%)
Hi-C Contacts: 4,371,920 (11.42% / 76.31%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 83.1%
Inter-chromosomal: 361,212  (0.94% / 6.30%)
Intra-chromosomal: 4,010,708  (10.48% / 70.00%)
Short Range (<20,000bp): 3,027,535  (7.91% / 52.84%)
Long Range (>20,000bp): 983,173  (2.57% / 17.16%)