Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/Fungus/F39/F1 -p /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.scf.sizes -y /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.MboI.juicer.txt -q 30 -n F1 -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.fa -o /mnt/storage/home/manuriddinov/scratch/Fungus/F1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  1,427,971
 Normal Paired: 108,571 (7.60%)
 Chimeric Paired: 40,907 (2.86%)
 Chimeric Ambiguous: 18,421 (1.29%)
 Unmapped: 1,260,072 (88.24%)
 Ligation Motif Present: 81,833 (5.73%)
Alignable (Normal+Chimeric Paired): 149,478 (10.47%)
Unique Reads: 148,699 (10.41%)
PCR Duplicates: 745 (0.05%)
Optical Duplicates: 34 (0.00%)
Library Complexity Estimate: 14,939,076
Intra-fragment Reads: 35,841 (2.51% / 24.10%)
Below MAPQ Threshold: 28,368 (1.99% / 19.08%)
Hi-C Contacts: 84,490 (5.92% / 56.82%)
 Ligation Motif Present: 44,223  (3.10% / 29.74%)
 3' Bias (Long Range): 78% - 22%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 46.2%
Inter-chromosomal: 19,343  (1.35% / 13.01%)
Intra-chromosomal: 65,147  (4.56% / 43.81%)
Short Range (<20,000bp): 54,163  (3.79% / 36.42%)
Long Range (>20,000bp): 10,984  (0.77% / 7.39%)