Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/Fungus/F39/F1 -p /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.scf.sizes -y /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.MboI.juicer.txt -q 30 -n F1 -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.fa -o /mnt/storage/home/manuriddinov/scratch/Fungus/F1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  1,427,971
 Normal Paired: 108,571 (7.60%)
 Chimeric Paired: 40,907 (2.86%)
 Chimeric Ambiguous: 18,421 (1.29%)
 Unmapped: 1,260,072 (88.24%)
 Ligation Motif Present: 81,833 (5.73%)
Alignable (Normal+Chimeric Paired): 149,478 (10.47%)
Unique Reads: 148,699 (10.41%)
PCR Duplicates: 745 (0.05%)
Optical Duplicates: 34 (0.00%)
Library Complexity Estimate: 14,939,076
Intra-fragment Reads: 35,841 (2.51% / 24.10%)
Below MAPQ Threshold: 34,748 (2.43% / 23.37%)
Hi-C Contacts: 78,110 (5.47% / 52.53%)
 Ligation Motif Present: 41,053  (2.87% / 27.61%)
 3' Bias (Long Range): 78% - 22%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 47.8%
Inter-chromosomal: 17,208  (1.21% / 11.57%)
Intra-chromosomal: 60,902  (4.26% / 40.96%)
Short Range (<20,000bp): 50,520  (3.54% / 33.97%)
Long Range (>20,000bp): 10,382  (0.73% / 6.98%)