Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/Fungus/F39/F2 -p /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.scf.sizes -y /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.MboI.juicer.txt -q 30 -n F2 -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.fa -o /mnt/storage/home/manuriddinov/scratch/Fungus/F2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  992,772
 Normal Paired: 30,798 (3.10%)
 Chimeric Paired: 7,269 (0.73%)
 Chimeric Ambiguous: 3,711 (0.37%)
 Unmapped: 950,994 (95.79%)
 Ligation Motif Present: 1,233 (0.12%)
Alignable (Normal+Chimeric Paired): 38,067 (3.83%)
Unique Reads: 37,935 (3.82%)
PCR Duplicates: 121 (0.01%)
Optical Duplicates: 11 (0.00%)
Library Complexity Estimate: 5,971,849
Intra-fragment Reads: 14,231 (1.43% / 37.51%)
Below MAPQ Threshold: 8,479 (0.85% / 22.35%)
Hi-C Contacts: 15,225 (1.53% / 40.13%)
 Ligation Motif Present: 79  (0.01% / 0.21%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 26.3%
Inter-chromosomal: 4,196  (0.42% / 11.06%)
Intra-chromosomal: 11,029  (1.11% / 29.07%)
Short Range (<20,000bp): 10,055  (1.01% / 26.51%)
Long Range (>20,000bp): 974  (0.10% / 2.57%)