Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -S final -d /mnt/storage/home/manuriddinov/scratch/fastq/Fungus/F39 -p /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.scf.sizes -y /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.MboI.juicer.txt -q 30 -n F39 -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Fungus/genome/scf/F39/F39.fa -o /mnt/storage/home/manuriddinov/scratch/Fungus/F39 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  2,420,743
 Normal Paired: 139,369 (5.76%)
 Chimeric Paired: 48,176 (1.99%)
 Chimeric Ambiguous: 22,132 (0.91%)
 Unmapped: 2,211,066 (91.34%)
 Ligation Motif Present: 83,066 (3.43%)
Alignable (Normal+Chimeric Paired): 187,545 (7.75%)
Unique Reads: 186,591 (7.71%)
PCR Duplicates: 909 (0.04%)
Optical Duplicates: 45 (0.00%)
Library Complexity Estimate: 19,275,320
Intra-fragment Reads: 50,058 (2.07% / 26.83%)
Below MAPQ Threshold: 35,544 (1.47% / 19.05%)
Hi-C Contacts: 100,989 (4.17% / 54.12%)
 Ligation Motif Present: 44,302  (1.83% / 23.74%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 5% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 43.1%
Inter-chromosomal: 24,054  (0.99% / 12.89%)
Intra-chromosomal: 76,935  (3.18% / 41.23%)
Short Range (<20,000bp): 64,899  (2.68% / 34.78%)
Long Range (>20,000bp): 12,036  (0.50% / 6.45%)