Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 9 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NR/NR1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n NR1 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NR1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  51,134,157
 Normal Paired: 31,675,577 (61.95%)
 Chimeric Paired: 12,612,775 (24.67%)
 Chimeric Ambiguous: 6,346,783 (12.41%)
 Unmapped: 499,022 (0.98%)
 Ligation Motif Present: 659,663 (1.29%)
Alignable (Normal+Chimeric Paired): 44,288,352 (86.61%)
Unique Reads: 32,711,918 (63.97%)
PCR Duplicates: 3,131,919 (6.12%)
Optical Duplicates: 8,444,515 (16.51%)
Library Complexity Estimate: 192,980,217
Intra-fragment Reads: 10,264,562 (20.07% / 31.38%)
Below MAPQ Threshold: 4,079,479 (7.98% / 12.47%)
Hi-C Contacts: 18,367,877 (35.92% / 56.15%)
 Ligation Motif Present: 216,754  (0.42% / 0.66%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,884,144  (13.46% / 21.04%)
Intra-chromosomal: 11,483,733  (22.46% / 35.11%)
Short Range (<20Kb): 6,982,022  (13.65% / 21.34%)
Long Range (>20Kb): 4,501,652  (8.80% / 13.76%)