Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 9 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NR/NR2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n NR2 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NR2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  53,311,383
 Normal Paired: 33,513,973 (62.86%)
 Chimeric Paired: 13,422,182 (25.18%)
 Chimeric Ambiguous: 5,935,731 (11.13%)
 Unmapped: 439,497 (0.82%)
 Ligation Motif Present: 561,672 (1.05%)
Alignable (Normal+Chimeric Paired): 46,936,155 (88.04%)
Unique Reads: 37,171,384 (69.73%)
PCR Duplicates: 2,868,673 (5.38%)
Optical Duplicates: 6,896,098 (12.94%)
Library Complexity Estimate: 265,920,958
Intra-fragment Reads: 10,815,268 (20.29% / 29.10%)
Below MAPQ Threshold: 4,466,267 (8.38% / 12.02%)
Hi-C Contacts: 21,889,849 (41.06% / 58.89%)
 Ligation Motif Present: 208,308  (0.39% / 0.56%)
 3' Bias (Long Range): 63% - 37%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,828,254  (14.68% / 21.06%)
Intra-chromosomal: 14,061,595  (26.38% / 37.83%)
Short Range (<20Kb): 8,329,075  (15.62% / 22.41%)
Long Range (>20Kb): 5,732,430  (10.75% / 15.42%)