Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 9 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NR/NR2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n NR2 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NR2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 53,311,383 Normal Paired: 33,513,973 (62.86%) Chimeric Paired: 13,422,182 (25.18%) Chimeric Ambiguous: 5,935,731 (11.13%) Unmapped: 439,497 (0.82%) Ligation Motif Present: 561,672 (1.05%) Alignable (Normal+Chimeric Paired): 46,936,155 (88.04%) Unique Reads: 37,171,384 (69.73%) PCR Duplicates: 2,868,673 (5.38%) Optical Duplicates: 6,896,098 (12.94%) Library Complexity Estimate: 265,920,958 Intra-fragment Reads: 10,815,268 (20.29% / 29.10%) Below MAPQ Threshold: 4,466,267 (8.38% / 12.02%) Hi-C Contacts: 21,889,849 (41.06% / 58.89%) Ligation Motif Present: 208,308 (0.39% / 0.56%) 3' Bias (Long Range): 63% - 37% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 7,828,254 (14.68% / 21.06%) Intra-chromosomal: 14,061,595 (26.38% / 37.83%) Short Range (<20Kb): 8,329,075 (15.62% / 22.41%) Long Range (>20Kb): 5,732,430 (10.75% / 15.42%)