Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/NR9 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/NR9 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  37,504,511
 Normal Paired: 19,509,585 (52.02%)
 Chimeric Paired: 11,769,455 (31.38%)
 Chimeric Ambiguous: 5,502,460 (14.67%)
 Unmapped: 723,011 (1.93%)
 Ligation Motif Present: 22,089,818 (58.90%)
Alignable (Normal+Chimeric Paired): 31,279,040 (83.40%)
Unique Reads: 21,199,890 (56.53%)
PCR Duplicates: 9,789,230 (26.10%)
Optical Duplicates: 289,920 (0.77%)
Library Complexity Estimate: 38,059,642
Intra-fragment Reads: 3,620,615 (9.65% / 17.08%)
Below MAPQ Threshold: 3,267,869 (8.71% / 15.41%)
Hi-C Contacts: 14,311,406 (38.16% / 67.51%)
 Ligation Motif Present: 7,256,965  (19.35% / 34.23%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,818,424  (10.18% / 18.01%)
Intra-chromosomal: 10,492,982  (27.98% / 49.50%)
Short Range (<20Kb): 5,144,652  (13.72% / 24.27%)
Long Range (>20Kb): 5,348,312  (14.26% / 25.23%)