Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/NR9 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/NR9 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  37,504,511
 Normal Paired: 19,509,585 (52.02%)
 Chimeric Paired: 11,769,455 (31.38%)
 Chimeric Ambiguous: 5,502,460 (14.67%)
 Unmapped: 723,011 (1.93%)
 Ligation Motif Present: 22,089,818 (58.90%)
Alignable (Normal+Chimeric Paired): 31,279,040 (83.40%)
Unique Reads: 21,199,890 (56.53%)
PCR Duplicates: 9,789,230 (26.10%)
Optical Duplicates: 289,920 (0.77%)
Library Complexity Estimate: 38,059,642
Intra-fragment Reads: 3,620,615 (9.65% / 17.08%)
Below MAPQ Threshold: 4,350,864 (11.60% / 20.52%)
Hi-C Contacts: 13,228,411 (35.27% / 62.40%)
 Ligation Motif Present: 6,787,624  (18.10% / 32.02%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,376,213  (9.00% / 15.93%)
Intra-chromosomal: 9,852,198  (26.27% / 46.47%)
Short Range (<20Kb): 4,914,715  (13.10% / 23.18%)
Long Range (>20Kb): 4,937,467  (13.16% / 23.29%)