Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/NRcomb -n NRcomb -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/NRcomb -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  87,132,181
 Normal Paired: 46,459,343 (53.32%)
 Chimeric Paired: 25,837,164 (29.65%)
 Chimeric Ambiguous: 13,125,757 (15.06%)
 Unmapped: 1,709,917 (1.96%)
 Ligation Motif Present: 43,226,089 (49.61%)
Alignable (Normal+Chimeric Paired): 72,296,507 (82.97%)
Unique Reads: 50,406,824 (57.85%)
PCR Duplicates: 21,153,265 (24.28%)
Optical Duplicates: 736,418 (0.85%)
Library Complexity Estimate: 95,780,799
Intra-fragment Reads: 10,237,186 (11.75% / 20.31%)
Below MAPQ Threshold: 7,430,221 (8.53% / 14.74%)
Hi-C Contacts: 32,739,417 (37.57% / 64.95%)
 Ligation Motif Present: 14,358,481  (16.48% / 28.49%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,516,969  (8.63% / 14.91%)
Intra-chromosomal: 25,222,448  (28.95% / 50.04%)
Short Range (<20Kb): 11,699,425  (13.43% / 23.21%)
Long Range (>20Kb): 13,522,977  (15.52% / 26.83%)