Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/Ch_1/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  14,734,040
 Normal Paired: 7,297,371 (49.53%)
 Chimeric Paired: 6,197,087 (42.06%)
 Chimeric Ambiguous: 1,207,923 (8.20%)
 Unmapped: 31,659 (0.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 13,494,458 (91.59%)
WARN [2025-03-03T23:44:53,358]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 13,224,409 (89.75%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 270,049 (1.83%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,183,379 (8.03% / 8.95%)
Hi-C Contacts: 12,041,030 (81.72% / 91.05%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 63% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 48%
 Cis/all (FF and RR orient): 87.0%
Inter-chromosomal: 822,288  (5.58% / 6.22%)
Intra-chromosomal: 11,218,742  (76.14% / 84.83%)
Short Range (<20,000bp): 7,421,098  (50.37% / 56.12%)
Long Range (>20,000bp): 3,797,644  (25.77% / 28.72%)