Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/Ch_2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  20,824,876
 Normal Paired: 11,240,848 (53.98%)
 Chimeric Paired: 8,006,145 (38.45%)
 Chimeric Ambiguous: 1,498,251 (7.19%)
 Unmapped: 79,632 (0.38%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 19,246,993 (92.42%)
WARN [2025-03-04T00:28:57,766]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,696,311 (89.78%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 550,682 (2.64%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,737,793 (8.34% / 9.29%)
Hi-C Contacts: 16,958,518 (81.43% / 90.71%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 85.2%
Inter-chromosomal: 1,065,165  (5.11% / 5.70%)
Intra-chromosomal: 15,893,353  (76.32% / 85.01%)
Short Range (<20,000bp): 11,377,354  (54.63% / 60.85%)
Long Range (>20,000bp): 4,515,999  (21.69% / 24.15%)