Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/Ch_2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  20,824,876
 Normal Paired: 11,240,848 (53.98%)
 Chimeric Paired: 8,006,145 (38.45%)
 Chimeric Ambiguous: 1,498,251 (7.19%)
 Unmapped: 79,632 (0.38%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 19,246,993 (92.42%)
WARN [2025-03-04T00:28:57,766]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,696,311 (89.78%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 550,682 (2.64%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,979,518 (14.31% / 15.94%)
Hi-C Contacts: 15,716,793 (75.47% / 84.06%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 86.3%
Inter-chromosomal: 879,010  (4.22% / 4.70%)
Intra-chromosomal: 14,837,783  (71.25% / 79.36%)
Short Range (<20,000bp): 10,763,988  (51.69% / 57.57%)
Long Range (>20,000bp): 4,073,795  (19.56% / 21.79%)