Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/Ch_aux_1/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  13,139,713
 Normal Paired: 7,623,361 (58.02%)
 Chimeric Paired: 4,556,012 (34.67%)
 Chimeric Ambiguous: 907,690 (6.91%)
 Unmapped: 52,650 (0.40%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 12,179,373 (92.69%)
WARN [2025-03-04T01:03:56,954]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,853,111 (90.21%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 326,262 (2.48%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,124,208 (8.56% / 9.48%)
Hi-C Contacts: 10,728,903 (81.65% / 90.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 81.1%
Inter-chromosomal: 745,580  (5.67% / 6.29%)
Intra-chromosomal: 9,983,323  (75.98% / 84.23%)
Short Range (<20,000bp): 7,705,449  (58.64% / 65.01%)
Long Range (>20,000bp): 2,277,874  (17.34% / 19.22%)