Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/Ch_aux_2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  16,119,868
 Normal Paired: 8,843,840 (54.86%)
 Chimeric Paired: 5,959,799 (36.97%)
 Chimeric Ambiguous: 1,250,457 (7.76%)
 Unmapped: 65,772 (0.41%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 14,803,639 (91.83%)
WARN [2025-03-04T01:39:52,778]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,431,309 (89.52%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 372,330 (2.31%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,417,733 (15.00% / 16.75%)
Hi-C Contacts: 12,013,576 (74.53% / 83.25%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 75.1%
Inter-chromosomal: 1,173,838  (7.28% / 8.13%)
Intra-chromosomal: 10,839,738  (67.24% / 75.11%)
Short Range (<20,000bp): 8,260,257  (51.24% / 57.24%)
Long Range (>20,000bp): 2,579,481  (16.00% / 17.87%)