Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/hsRad_1/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  16,702,464
 Normal Paired: 9,531,504 (57.07%)
 Chimeric Paired: 6,098,126 (36.51%)
 Chimeric Ambiguous: 1,044,851 (6.26%)
 Unmapped: 27,983 (0.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 15,629,630 (93.58%)
WARN [2025-03-04T02:17:35,642]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 15,288,044 (91.53%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 341,586 (2.05%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,139,277 (12.81% / 13.99%)
Hi-C Contacts: 13,148,767 (78.72% / 86.01%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 57%
 Cis/all (FF and RR orient): 89.6%
Inter-chromosomal: 586,513  (3.51% / 3.84%)
Intra-chromosomal: 12,562,254  (75.21% / 82.17%)
Short Range (<20,000bp): 9,064,022  (54.27% / 59.29%)
Long Range (>20,000bp): 3,498,232  (20.94% / 22.88%)